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Accelerating Anaerobic Microbiome Workflows

Automate colony plating, picking, and liquid handling under anaerobic conditions—boosting throughput, reproducibility, and strain diversity for microbiome research.

Discover How Automation Accelerates Anaerobic Microbiome Research

Learn how the QPix FLEX integrated workcell transforms anaerobic culturomics—enabling early, morphology-based colony selection and automated liquid-handling workflows that double throughput while maintaining sterility and traceability.

You will find in this Application Note:

End-to-end automated plating, picking, and liquid-handling workflow inside anaerobic chambers
High-resolution imaging that detects colonies 1–2 days earlier than manual methods
MALDI-TOF confirmation for rapid strain identification
Quantitative comparison of manual vs. automated culturomics (Figure 4)
Workflow gains in throughput, reproducibility, and strain diversity

Sample pages

Anaerobic Microbiom Introduction

Introduction

Functional Insight for Lab Workflow

From Fecal Sample to Functional Insight

QPix FLEX in Action for Microbiome Innovation

QPix FLEX in Action

Integrating QPix FLEX Into a Microbiome Discovery Pipeline

Workflow Spotlight

Automate Anaerobic Microbiome Workflows

Streamline microbiome R&D with the QPix FLEX system—combining automated plating, colony picking, and liquid handling under anaerobic conditions to accelerate discovery.

Compatible with anaerobic/hypoxic chambers
Detects colonies up to 2 days earlier via imaging
Integrates barcode tracking for traceability
Doubles throughput and reduces manual error

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Streamline Microbiome Workflows for Greater Reproducibility

Product family

QPix

Product primary application

Cell Line Development; Cell Line Development Workflow; Drug Discovery and Development; Food & Beverage; Gene Editing (CRISPR/Cas9); Microbiomes; Monoclonal Antibodies (mAbs); Monoclonal Antibody Production; Monoclonality; Plasmid Production; Synthetic Biology; QPix Microbial Colony Pickers; QPix FLEX Microbial Colony Picker

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Title

Accelerating Anaerobic Microbiome Workflows

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We’re excited to share with you our latest learnings – from new product innovations to improved methods for automating complex biology workflows – our experts look forward to connecting with you and exploring ways to advance scientific research, together.

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